Lijst van primers gebruikt in de fylogenie en identificatie van schimmels
Binnen de mycologie wordt gebruikt gemaakt van verschillende markers voor de fylogenie, multi-locus-sequence-typing.
Sommige van deze markers kunnen direct gebruikt worden voor identificatie.
Welke markers gebruikt worden is afhankelijk van het 'verwachte' organisme. Bij een niet-definieerbare isolaat wordt in eerste instantie de ITS regio's van het nrRNA gebruikt.
| Marker | Sequence | Direction |
| 5.8G | AAGGTGCGTTCAAAGATTCG | Forward |
| 5.8S-R | TCGATGAAGAACGCAGC | Reverse |
| ACT1 | CTGGGAYGAYATGGARAAGAT | Forward |
| Act1F | GATCTGGCACCACACCTTCT | Forward |
| Act1R | GCAGGTCTGAACAAGGCTTC | Reverse |
| ACT2 | GYTCRGCCAGGATCTTCAT | Reverse |
| ACT-512F | ATGTGCAAGGCCGGTTTCGC | Forward |
| ACT-783R | TACGAGTCCTTCTGGCCCAT | Reverse |
| ACTbw | AAGCCACCGATCCAGACG | Reverse |
| ACTfw | TCTTCGAGACCTTCAACGCC | Forward |
| actin-CA14 | AACTGGGATGACATGGAGAAGATCTGGC | Forward |
| actin-CA5R | GTGAACAATGGATGGACCAGATTCGTCG | Reverse |
| Al47-EF3-1650-f(P6-F) | GGHGGHTGGAAGATGAAG | Forward |
| Al47-EF3-2451-R1(P6-R) | TCRTAVSWGTTCTTGAACTT | Reverse |
| Al50+51-EF3-2900-F(P7-F) | TCYGGWGGHTGGAAGATGAAG | Forward |
| Al50+51-EF3-3300-R(P7-R) | YTTGGTCTTGACACCNTC | Reverse |
| apio_bt2rev | CGTGGCTTTAGCCAAAAAC | Reverse |
| boydii_bt2rev | GTTTGAACCAAAAACTTACCT | Reverse |
| Bt2a | GGTAACCAAATCGGTGCTGCTTTC | Forward |
| Bt2b | ACCCTCAGTGTAGTGACCCTTGGC | Reverse |
| BtpullA | ACTCCCTGCGCATCCTCACCC | Forward |
| BtpullB | CTCCCACCTGCGCATCAACAA | Forward |
| Btub2Fd | GTBCACCTYCARACCGGYCARTG | Forward |
| Btub4Rd | CCRGAYTGRCCRAARACRAAGTTGTC | Reverse |
| CAL-228F | GAGTTCAAGGAGGCCTTCTCCC | Forward |
| CAL-737R | CATCTTTCTGGCCATCATGG | Reverse |
| Cauris_FKS1HS1Fwd | TGGTGCTCAGCATTTGAGTC | Forward |
| Cauris_FKS1HS1Rvd | ATTGTTGTCATCCTGCGACA | Reverse |
| CaurisERG11dFwd | TGGGTKGGYTCWGCTGTTG | Forward |
| CaurisERG11dRvd | TTCWGCTGGYTCCATTGG | Reverse |
| CaurisERG11Fwd | GTGCCCATCGTCTACAACCT | Forward |
| CaurisERG11Rvd | TCTCCCACTCGATTTCTGCT | Reverse |
| CaurisFKS1Fwd | ATGTCTTACGATAACAATC | Forward |
| CaurisFKS1Rvd | TTAGAATGCCTTTGTAGTATAG | Reverse |
| CaurisMFalphaFwd | GAGAAAAGAGACGCTGAAGCTGAG | Forward |
| CaurisMFalphaRvd | TCAACCTTCGAGGTCAGCTTCA | Reverse |
| CL1 | GARTWCAAGGAGGCCTTCTC | Forward |
| CL2A | TTTTTGCATCATGAGTTGGAC | Reverse |
| CL2F | GACAAGGAYGGYGATGGT | Forward |
| CL2R | TTCTGCATCATGAGYTGSAC | Reverse |
| CL2R2 | CTTCTCGCCRATSGASGTCAT | Reverse |
| D1 | AACTTAAGCATATCAATAAGCGGAGGA | Forward |
| D2 | GGTCCGTGTTTCAAGACGG | Reverse |
| ERG11FwdSeq_pos694 | AACTTCGTCTTCCCCCACTT | Forward |
| ERG11RvdSeq_pos750 | CTGAGCAGCGTCTCTCTTCC | Reverse |
| fRPB2-11aR | GCRTGGATCTTRTCRTCSACC | Reverse |
| fRPB2-5F | GAYGAYMGWGATCAYTTYGG | Forward |
| fRPB2-5R | CCRAARTGATCWCKRTCRTC | Reverse |
| fRPB2-7cF | ATGGGYAARCAAGCYATGGG | Forward |
| fRPB2-7cR | CCCATRGCTTGYTTRCCCAT | Reverse |
| gRpb1-A | GAKTGTCCKGGWCATTTTGG | Forward |
| gRpb1-C | CNGCDATNTCRTTRTCCATRTA | Reverse |
| ITS1 | TCCGTAGGTGAACCTGCGG | Forward |
| ITS1N | TCCGTWGGTGAACCWG | Forward |
| ITS2 | GCTGCGTTCTTCATCGATGC | Reverse |
| ITS3 | GCATCGATGAAGAACGCAGC | Forward |
| ITS4 | TCCTCCGCTTATTGATATGC | Reverse |
| ITS5 | GGAAGTAAAAGTCGTAACAAGG | Forward |
| LR0R | ACCCGCTGAACTTAAGC | Forward |
| LR5 | TCCTGAGGGAAACTTCG | Reverse |
| LR7 | TACTACCACCAAGATCT | Reverse |
| NL1 | GCATATCAATAAGCGGAGGAAAAG | Forward |
| NL2m | CTTGTGCGCTATCGGTCTC | Reverse |
| NL3m | GAGACCGATAGCGCACAAG | Forward |
| NL4 | GGTCCGTGTTTCAAGACGG | Reverse |
| NL4m | GGTCCGTGTTTCAAGACGG | Reverse |
| NS1 | GTAGTCATATGCTTGTCTC | Forward |
| NS2 | GGCTGCTGGCACCAGACTTGC | Reverse |
| NS24 | AAACCTTGTTACGACTTTTA | Reverse |
| NS3 | GCAAGTCTGGTGCCAGCAGCC | Forward |
| NS4 | CTTCCGTCAATTCCTTTAAG | Forward |
| NS5 | AACTTAAAGGAATTGACGGAAG | Reverse |
| NS6 | GCATCACAGACCTGTTATTGCCTC | Forward |
| NS7 | GAGGCAATAACAGGTCTGTGATGC | Forward |
| NS8 | TCCGCAGGTTCACCTACGGA | Reverse |
| pks1-F | GARGCNYTNGARATG | Forward |
| pks1-R | CCDGTDCCGTGCATYTC | Reverse |
| Rpb1F | CATGTGAGCTGGTGTGTATGC | Forward |
| Rpb1-Fa | CAYAARGARTCYATGATGGGWC | Forward |
| Rpb1-G2R | GTCATYTGDGTDGCDGGYTCDC | Reverse |
| Rpb1R | CGAGCTTGAACGTCAAATCA | Reverse |
| Rpb2-11aR | GCRTGGATCTTRTCRTCSACC | Reverse |
| Rpb2-5F2 | GGGGWGAYCAGAAGAAGGC | Forward |
| Rpb2-6F | TGGGGKWTGGTYTGYCCTGC | Forward |
| Rpb2-7cF | ATGGGYAARCAAGCYATGG | Forward |
| Rpb2-7cR | CCCATRGCTTGYTTRCCCAT | Reverse |
| Rpb2-7R | CCCATWGCYTGCTTMCCCAT | Reverse |
| Sdehoogii1-F | TCAGCGCCCGAAAGGACGAC | Forward |
| T1 | AACATGCGTGAGATTGTAAGT | Forward |
| T10 | ACGATAGGTTCACCTCCAGAC | Forward |
| T2 | TAGTGACCCTTGGCCCAGTTG | Reverse |
| T22 | TCTGGATGTTGTTGGGAATCC | Reverse |
| T222 | TCAATTTTCCCATTCTCAACTT | Reverse |
| T3B | AGGTCGCGGGTTCGAATCC | Forward |
| V9 | TGCGTTGATTACGTCCCTGC | Forward |
| V9G | TTACGTCCCTGCCCTTTGTA | Forward |
